[Pellet-users] using Pellet with galen.owl

[helen.chen at agfa.com]

Evren

I was using the galen full version, which size is 21M.

I checked out the smaller version provided in your link. It does have a 
nice subset of anatomy which I am interested.   Unfortunately, this galen 
version does not contain adequate amount of pathological information I am 
also looking for. 

My use case is as following:

A patient has a set of pathological symptoms and conditions, and his 
doctor wants to order some radiological studies.   On the new order entry 
form, the physician selects the study type (Chest CT, Pelvis CT, etc). The 
order entry system then displays relevant pathological conditions to 
respective body parts.  I hope to use "LocativeAtttribute" in galen to 
provide such anatomical - pathological connection. 

Do you have any suggestions on how I might get a subset of galen which be 
used for this purpose?

Thanks for your help. 

Helen

 




"Evren Sirin" <evren at clarkparsia.com> 
10/05/2007 09:11 AM
Please respond to
evren at clarkparsia.com


To
Helen Chen/AMPJB/AGFA at AGFA
cc
pellet-users at lists.owldl.com
Subject
RE: [Pellet-users] using Pellet with galen.owl







Which version of Galen are you trying? There are some versions (mostly 
subsets) out there (e.g. [1]) which Pellet can handle easily. But full 
Galen is too complex for Pellet to handle currently.

About the classification status, you can edit the configuration option 
USE_CLASSIFICATION_MONITOR to see the classification status printed on 
consoloe or shown as a Swing window. See [2] to learn about how to 
configure Pellet.

Cheers,
Evren

[1] http://www.cs.man.ac.uk/~horrocks/OWL/Ontologies/galen.owl
[2] http://pellet.owldl.com/faq/config




On Thu, October 4, 2007 12:43 pm, helen.chen at agfa.com said:

> _______________________________________________
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> _______________________________________________
> 
> Sponsored by Clark & Parsia, LLC http://clarkparsia.com/List:
> 
> I am using pellet 1.5.0.
> 
> I need to do a "classify" on galen.owl.  I also hope to run some SPARQL
> queries in order to obtain a segment of all anatomical components of
> "HEADANDNECK".
> 
> I am using the command line script, and increased the max memory to 
1000M.
> 
> 
> The process run at full CPU for about 30 minutes before I have to
> terminate it.  During this 30 minutes,  there is no additional message
> displayed except the initial message "Input file: ......../galen.owl"
> 
> Does anyone have some experience with using pellet on galen.owl?  Is
> pellet capable of handling galen.owl and if so, what would be the rough
> time length I need to wait?
> 
> Thanks for your help.
> 
> Helen Chen.
> 
> Agfa Healthcare.
> 
> 


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